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Engineering of the Substrate Pocket of α-ketoglutaric Semialdehyde Dehydrogenase for Improving the Activity toward 3-hydroxypropanal
  • Park, Ye Seop ;
  • Nasir, Abdul ;
  • Nguyen-Vo, Thuan Phu ;
  • Ryu, Huichang ;
  • Seok, Joo Yeon ;
  • Jung, Gyoo Yeol ;
  • Park, Sunghoon ;
  • Yoo, Tae Hyeon
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Publication Year
2023-12-01
Publisher
Korean Society for Biotechnology and Bioengineering
Citation
Biotechnology and Bioprocess Engineering, Vol.28, pp.1015-1024
Keyword
3-Hydroxypropanal3-Hydroxypropionic acidaldehyde dehydrogenaseenzyme engineeringmolecular dynamics simulation
Mesh Keyword
3-hydroxypropanal3-Hydroxypropionic acidAldehyde dehydrogenaseBuilding blockesDynamics simulationEnzyme engineeringMolecular dynamic simulationSemialdehyde dehydrogenaseValue-added chemicalsWild-type enzymes
All Science Classification Codes (ASJC)
BiotechnologyBioengineeringApplied Microbiology and BiotechnologyBiomedical Engineering
Abstract
3-Hydroxypropionic acid (3-HP) is a key building block for value-added chemicals. A biological route for synthesizing this molecule is two-step enzymatic reactions; dehydration of glycerol to 3-hydroxypropanal (3-HPA) by glycerol dehydratase and then oxidation of 3-HPA to 3-HP by aldehyde dehydrogenase. Here, we report an aldehyde dehydrogenase, an engineered α-ketoglutaric semialdehyde dehydrogenase (KGSADH) from Azospirillum brasilense. The variant, named 2C10, was obtained by applying a large KGSADH library to a selection method based on a 3-HP-responsive transcription factor and then a screening method for observing the activities of individual clones. 2C10 exhibited a 4.65-fold higher catalytic activity (kcat/Km: 100 ± 7.1 s−1mM−1) toward 3-HPA than the wild-type enzyme. The flask culture of Pseudomonas denitrificans with 2C10 resulted in an approximately 30% increase in 3-HP titer (43.2 mM) compared with that obtained using wild-type KGSADH (33.1 mM). Molecular dynamics simulations suggested that compared to the wild-type enzyme, 2C10 has a less flexible and smaller binding pocket for aldehyde substrates.
Language
eng
URI
https://dspace.ajou.ac.kr/dev/handle/2018.oak/32763
DOI
https://doi.org/10.1007/s12257-021-0335-3
Fulltext

Type
Article
Funding
This work was supported by the National Research Foundation of Korea (2019R1A6A1A11051471 and 2021R1A2C2003453).
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College of Bio-convergence Engineering
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