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The Characteristics of Senescent Tumor Cells in Colorectal Cancer
  • 박순상
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dc.contributor.advisorTae Jun Park-
dc.contributor.author박순상-
dc.date.issued2024-02-
dc.identifier.other33285-
dc.identifier.urihttps://aurora.ajou.ac.kr/handle/2018.oak/39071-
dc.description학위논문(박사)--의생명과학과,2024. 2-
dc.description.abstractCellular senescence, traditionally defined as a state of permanent cell cycle arrest, has long been considered a protective mechanism against cancer progression. However, recent research has unveiled a more complex relationship between senescence and cancer. This dissertation aimed to identify novel markers for visualizing and targeting senescent tumor cells in colorectal cancer (CRC). The dissertation also revealed a fascinating aspect of CRC cell behavior: a gradual evolution from well-formed glandular structures to collective invasion, culminating in the development of cancer cell budding at the invasive front. This evolutionary process was accompanied by cancer cell senescence, challenging conventional knowledge about the defensive role of senescence against cancer progression. Trajectory and immunohistochemistry analyses uncovered two distinct types of senescent tumor cells, designated as type I and type II. These two types played different roles in the progression of CRC due to differences in their gene expression profiles. Type I senescent tumor cells (p16INK4A+/LAMC2-/MMP7-) were primarily found in the collective invasion region of CRC. In contrast, type II senescent tumor cells (p16INK4A+/LAMC2+/MMP7+), representing the final evolutionary stage of cancer cells, were predominantly located in the partial-EMT region. These type II cells were strongly associated with local invasion and lymph node metastasis in CRC, potentially leading to a worse prognosis for patients. Overall, the dissertation sheds new light on the complex interplay between cellular senescence and cancer progression in the context of CRC. It highlights the diverse roles that senescent tumor cells can play in the tumor microenvironment. Key words: Cellular senescence, Senescent tumor cells, cancer evolution, senescence- associated secretory phenotype, single-cell RNA-sequencing-
dc.description.tableofcontentsⅠ. INTRODUCTION 1_x000D_ <br> 1. Cellular Senescence and Cancer 1_x000D_ <br> 2. Detection of Senescent Tumor Cells in Vitro and in Vivo 2_x000D_ <br> 3. Cancer Promoting Features of Senescent Cells in cancer tissues 3_x000D_ <br> 4. Cellular Senescence and Spatial Evolution of Cancer 5_x000D_ <br>Ⅱ. MATERIALS & METHODS 7_x000D_ <br> 1. IHC analysis of CRC tissues 7_x000D_ <br> 2. IHC Imaging Analysis 8_x000D_ <br> 3. Visium Spatial Transcriptomics Analysis 8_x000D_ <br> 4. Single-cell RNA-sequencing (scRNA-seq) 9_x000D_ <br> 5. Microdissection-assisted RNA-sequencing (mdaRNA-seq) 10_x000D_ <br> 6. Cell Culture and Induction of Cellular Senescence in Vitro 10_x000D_ <br> 7. SA-β-Gal Staining 11_x000D_ <br> 8. SW620 Bulk RNA-sequencing 11_x000D_ <br> 9. Immunoblotting 12_x000D_ <br> 10. Transfection of Vectors and siRNAs 12_x000D_ <br> 11. TCGA Data Set Analysis 13_x000D_ <br> 12. Real-time Polymerase Chain Reaction (RT-PCR) 13_x000D_ <br> 13. Cell Invasion Assay 14_x000D_ <br> 14. Methylation-specific PCR (MSP) 14_x000D_ <br> 15. Estimation of ROS Levels in vivo 14_x000D_ <br> 16. Lentivirus preparation 15_x000D_ <br> 17. Statistical analysis 15_x000D_ <br>Ⅲ. RESULT 16_x000D_ <br> Part I: Finding Novel Markers for Senescent Tumor Cells 16_x000D_ <br> 1. Detecting Senescent Tumor Cells using Conventional Senescence Markers 16_x000D_ <br> 2. scRNA-seq of CRC Dataset GSE166555 19_x000D_ <br> 3. scRNA-seq Analysis of CDKN2A-positive Cells Using GSEA 21_x000D_ <br> 4. In vivo validation of p15INK4B as a marker for senescent tumor cells in CRC 23_x000D_ <br> 5. In vitro validation of p15INK4B as a marker for senescent tumor cells in CRC 25_x000D_ <br> 6. Cytokeratin 7 as a marker for senescent tumor cells in CRC 28_x000D_ <br> Part II: Cancer-promoting features of senescent tumor cells 30_x000D_ <br> 1. Location of senescent tumor cells is in the CRC tissue 30_x000D_ <br> 2. Spatial transcriptomics analysis of CRC tissues using FFPE samples 39_x000D_ <br> 3. Senescent Tumor Cells at the Invasive Front Exhibit Distinctive Phenotype 42_x000D_ <br> 4. Senescent Cells Evolve from Non-senescent Tumor Cells 52_x000D_ <br> 5. Senescence-related Epigenetic Reprogramming in Cancer Evolution 58_x000D_ <br> 6. Senescent Tumor Cells Express Unique Genes to Invade 71_x000D_ <br> 7. LAMC2-EGFR-MMP7 Signaling Axis in Type II Senescent Tumor Cells 81_x000D_ <br> 8. Type II Senescent Tumor Cells are Related to Lymph Node Metastasis 90_x000D_ <br>Ⅳ. DISCUSSION 98_x000D_ <br> 1. Detection of Senescent Tumor Cells and Limitations 98_x000D_ <br> 2. Cellular Senescence and Cancer Evolution 101_x000D_ <br>Ⅴ. REFERENCES 109_x000D_-
dc.language.isoeng-
dc.publisherThe Graduate School, Ajou University-
dc.rights아주대학교 논문은 저작권에 의해 보호받습니다.-
dc.titleThe Characteristics of Senescent Tumor Cells in Colorectal Cancer-
dc.typeThesis-
dc.contributor.affiliation아주대학교 대학원-
dc.contributor.alternativeNamePARK SOON SANG-
dc.contributor.department일반대학원 의생명과학과-
dc.date.awarded2024-02-
dc.description.degreeDoctor-
dc.identifier.urlhttps://dcoll.ajou.ac.kr/dcollection/common/orgView/000000033285-
dc.subject.keywordCancer Evolution-
dc.subject.keywordCellular Senescence-
dc.subject.keywordSenescent Tumor Cells-
dc.subject.keywordSpatial Evolution-
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