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Comparative genome analysis of Psychrobacillus strain PB01, isolated from an icebergoa mark
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Publication Year
2020-01-01
Publisher
Korean Society for Microbiology and Biotechnology
Citation
Journal of Microbiology and Biotechnology, Vol.30, pp.237-243
Keyword
IcebergPlasmidPsychrobacillusTCA cycle
Mesh Keyword
BacillaceaeCitric Acid CycleEnergy MetabolismEnvironmental MicrobiologyGenome, BacterialGenomicsGlyoxylatesIce CoverMetabolic Networks and PathwaysPlasmids
All Science Classification Codes (ASJC)
BiotechnologyApplied Microbiology and Biotechnology
Abstract
A novel psychrotolerant Psychrobacillus strain PB01, isolated from an Antarctic iceberg, was comparatively analyzed with five related strains. The complete genome of strain PB01 consists of a single circular chromosome (4.3 Mb) and a plasmid (19 Kb). As potential low-temperature adaptation strategies, strain PB01 has four genes encoding cold-shock proteins, two genes encoding DEAD-box RNA helicases, and eight genes encoding transporters for glycine betaine, which can serve as a cryoprotectant, on the genome. The pan-genome structure of the six Psychrobacillus strains suggests that strain PB01 might have evolved to adapt to extreme environments by changing its genome content to gain higher capacity for DNA repair, translation, and membrane transport. Notably, strain PB01 possesses a complete TCA cycle consisting of eight enzymes as well as three additional Helicobacter pylori-type enzymes: ferredoxin-dependent 2-oxoglutarate synthase, succinyl-CoA/acetoacetyl-CoA transferase, and malate/quinone oxidoreductase. The co-existence of the genes for TCA cycle enzymes has also been identified in the other five Psychrobacillus strains.
Language
eng
URI
https://dspace.ajou.ac.kr/dev/handle/2018.oak/31179
DOI
https://doi.org/10.4014/jmb.1909.09008
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Type
Article
Funding
This work was supported by the National Research Foundation of Korea (NRF) grant funded by the government of South Korea (grant numbers 2014M3A6A8066439 and 2017R1A2B4011899).
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Lee, Pyung Cheon Image
Lee, Pyung Cheon이평천
College of Bio-convergence Engineering
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